The expected behavior is to have an IPv6 server in /etc/resolv.conf.
Quoting from man dig:

A typical invocation of dig looks like:

    dig @server name type

where:

server
    is the name or IP address of the name server to query. [...] If no server 
argument is provided, dig consults /etc/resolv.conf and queries the name 
servers listed there.

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https://bugs.launchpad.net/bugs/1010724

Title:
  No IPv6 nameservers in Ubuntu 12.04

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