One can get this to work.

This seems to work correctly on my set up (I am using Kubuntu 12.04 with
the KDE version of appmenu (which uses the same library as Unity as far
as I know).

After a clean install for Eclipse 3.8, this does not work, but after
changing the eclipse.ini to my default settings, it started working.
Unfortunately, I do now know which setting fixes the issue.

Here is my Eclipse.ini:

-startup
plugins/org.eclipse.equinox.launcher_1.3.0.v20120522-1813.jar
--launcher.library
plugins/org.eclipse.equinox.launcher.gtk.linux.x86_64_1.1.200.v20120522-1813
-vm
/home/fwi/Applications/java/jdk7_01-x64/jdk1.7.0_01/bin/java
-product
org.eclipse.epp.package.jee.product
-showsplash
org.eclipse.platform
--launcher.XXMaxPermSize
256m
--launcher.defaultAction
openFile
-pluginCustomization
/home/fwi/Workspace/defaults-1.epf
--launcher.XXMaxPermSize
1024m
-vmargs
-Dosgi.requiredJavaVersion=1.5
-Xms3G
-Xmx3G
-XX:+UnlockExperimentalVMOptions
-XX:PermSize=512m
-XX:MaxPermSize=1024m
-XX:MaxHeapFreeRatio=70
-XX:+CMSIncrementalPacing
-XX:+UseG1GC
-XX:+UseFastAccessorMethods
-XX:ParallelGCThreads=2
-Dcom.sun.management.jmxremote
-Xverify:none

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https://bugs.launchpad.net/bugs/613119

Title:
  Eclipse menu does not render correctly in unity bar

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