isn't it possbile to provide an alternative kernel-image or a loadable
module for this in ubuntu? there are patches for newer kernel versions:

http://www.thinkwiki.org/wiki/HDAPS

There seems to be a new, redesigned, patch which is maybe easier to intergrate 
? 
http://article.gmane.org/gmane.linux.drivers.hdaps.devel/993

The HDAPS developers try to get the patch into the mainline kernel ..
http://news.gmane.org/gmane.linux.drivers.hdaps.devel

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Please include queuefreeze patch in future kernel builds
https://bugs.launchpad.net/bugs/53927
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