I can confirm this to be still present with 11.10 (didn't test it with 12.04
but will test with 12.10stable).
The bootloader of the primary disk is overwritten to start grub, which is
installed on the linux-HDD. This results in problems when the linux-disk gets
removed or formatted.
** Changed in: ubiquity (Ubuntu)
Status: New => Confirmed
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https://bugs.launchpad.net/bugs/704763
Title:
boot loader not installed to target disk
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