Alessandro Zappalà, thank you for providing the requested information. 
Regarding your Bug Description:
>"from HDD to USB (FAT):
1. 450 MB in 4 sec. (USB sitck EMPTY) 112.5 MB/s
2. 450 MB in 52 sec. (USB stick not EMPTY) 8.6 MB/s
3. 735 MB in 26 sec. (USB stick EMPTY) 28.2 MB/s
4. 735 MB in 40 sec. (USB stick not EMPTY) 18.3 MB/s
5. 735 MB in 3 sec. (after formatting USB stick) 245 MB/s
6. 1,5 GB in 3min35 (USB sitck EMPTY) 6.9 MB/s
7. 1,5 GB in 4min31 (USB stick not EMPTY) 5.5 MB/s

from HDD to USB (ext4)
1. 450 MB in 1 sec. (USB sitck EMPTY) 450 MB/s
2. 450 MB in 52 sec. (USB sitck not EMPTY) 8.6 MB/s
3. 735 MB in 14 sec. (USB sitck EMPTY) 12.2 MB/s
4. 735 MB in 1min (USB stick not EMPTY) 12.25 MB/s
5. 735 MB in 16 sec. (after formatting USB stick) 45.9 MB/s
5. 1,5 GB in 3min04 (USB sitck EMPTY) 8.1 MB/s
6. 1,5 GB in 5min14 (USB stick not EMPTY) 4.7 MB/s

from USB (FAT) to USB (FAT)
1. 735 MB in 10 sec. (USB sitck EMPTY) 73 MB/s
2. 735 MB in 4min (USB stick not EMPTY) 3.0 MB/s"

What are the vendor IDs via lsusb for each of these tests? As well,
which port(s) specifically did you plug them into (USB 2.0 or 3.0)?

** Description changed:

  Low speed when transferring files over USB 2.0 and USB 3.0. An example device 
with FAT:
  Bus 002 Device 004: ID 13fe:4100 Kingston Technology Company Inc.
  
  If the USB drive is not empty, the transferring speed is lower.
  the bigger the file, the slower the speed. Here are my tests:
  
  from HDD to USB (FAT):
- 1. 450 MB in 4 sec. (USB sitck EMPTY)
- 2. 450 MB in 52 sec. (USB stick not EMPTY)
- 3. 735 MB in 26 sec. (USB stick EMPTY)
- 4. 735 MB in 40 sec. (USB stick not EMPTY)
- 5. 735 MB in 3 sec. (after formatting USB stick)
- 6. 1,5 GB in 3min35 (USB sitck EMPTY)
- 7. 1,5 GB in 4min31 (USB stick not EMPTY)
+ 1. 450 MB in 4 sec. (USB sitck EMPTY) 112.5 MB/s
+ 2. 450 MB in 52 sec. (USB stick not EMPTY) 8.6 MB/s
+ 3. 735 MB in 26 sec. (USB stick EMPTY) 28.2 MB/s
+ 4. 735 MB in 40 sec. (USB stick not EMPTY) 18.3 MB/s
+ 5. 735 MB in 3 sec. (after formatting USB stick) 245 MB/s
+ 6. 1,5 GB in 3min35 (USB sitck EMPTY) 6.9 MB/s
+ 7. 1,5 GB in 4min31 (USB stick not EMPTY) 5.5 MB/s
  
  from HDD to USB (ext4)
- 1. 450 MB in 1 sec. (USB sitck EMPTY)
- 2. 450 MB in 52 sec. (USB sitck not EMPTY)
- 3. 735 MB in 14 sec. (USB sitck EMPTY)
- 4. 735 MB in 1min (USB stick not EMPTY)
- 5. 735 MB in 16 sec. (after formatting USB stick)
- 5. 1,5 GB in 3min04 (USB sitck EMPTY)
- 6. 1,5 GB in 5min14 (USB stick not EMPTY)
+ 1. 450 MB in 1 sec. (USB sitck EMPTY) 450 MB/s
+ 2. 450 MB in 52 sec. (USB sitck not EMPTY) 8.6 MB/s
+ 3. 735 MB in 14 sec. (USB sitck EMPTY) 12.2 MB/s
+ 4. 735 MB in 1min (USB stick not EMPTY) 12.25 MB/s
+ 5. 735 MB in 16 sec. (after formatting USB stick) 45.9 MB/s
+ 5. 1,5 GB in 3min04 (USB sitck EMPTY) 8.1 MB/s
+ 6. 1,5 GB in 5min14 (USB stick not EMPTY) 4.7 MB/s
  
  from USB (FAT) to USB (FAT)
- 1. 735 MB in 10 sec. (USB sitck EMPTY)
- 2. 735 MB in 4min (USB stick not EMPTY)
+ 1. 735 MB in 10 sec. (USB sitck EMPTY) 73 MB/s
+ 2. 735 MB in 4min (USB stick not EMPTY) 3.0 MB/s
  
  I tested the ext3 filesystem and I had the same results.
  
- This is not reproducible with FAT:
+ This is not reproducible using device with FAT:
  Bus 002 Device 003: ID 0766:0001 Jess-Link Products Co., Ltd
  
  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: linux-image-3.2.0-32-generic 3.2.0-32.51
  ProcVersionSignature: Ubuntu 3.2.0-32.51-generic 3.2.30
  Uname: Linux 3.2.0-32-generic x86_64
  AlsaVersion: Advanced Linux Sound Architecture Driver Version 1.0.24.
  ApportVersion: 2.0.1-0ubuntu13
  Architecture: amd64
  ArecordDevices:
   **** List of CAPTURE Hardware Devices ****
   card 0: PCH [HDA Intel PCH], device 0: ALC269VB Analog [ALC269VB Analog]
     Subdevices: 1/1
     Subdevice #0: subdevice #0
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC0:  aleksej    1843 F.... pulseaudio
  Card0.Amixer.info:
   Card hw:0 'PCH'/'HDA Intel PCH at 0xdf000000 irq 49'
     Mixer name : 'Intel CougarPoint HDMI'
     Components : 'HDA:10ec0269,10431ba3,00100100 
HDA:80862805,80860101,00100000'
     Controls      : 30
     Simple ctrls  : 14
  Date: Tue Oct 16 18:46:30 2012
  HibernationDevice: RESUME=UUID=89690659-5cf9-495f-9a95-8615f4f3b144
  InstallationMedia: Ubuntu 11.10 "Oneiric Ocelot" - Release amd64 (20111012)
  MachineType: ASUSTeK Computer Inc. U36SD
  ProcFB: 0 inteldrmfb
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-3.2.0-32-generic 
root=UUID=f15fe73f-5542-4724-969b-90222a5cc2e3 ro quiet splash 
i915.i915_enable_rc6=1 vt.handoff=7
  RelatedPackageVersions:
   linux-restricted-modules-3.2.0-32-generic N/A
   linux-backports-modules-3.2.0-32-generic  N/A
   linux-firmware                            1.79.1
  SourcePackage: linux
  StagingDrivers: mei
  UpgradeStatus: Upgraded to precise on 2012-05-15 (154 days ago)
  dmi.bios.date: 07/12/2011
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: U36SD.205
  dmi.board.asset.tag: ATN12345678901234567
  dmi.board.name: U36SD
  dmi.board.vendor: ASUSTeK Computer Inc.
  dmi.board.version: 1.0
  dmi.chassis.asset.tag: No Asset Tag
  dmi.chassis.type: 10
  dmi.chassis.vendor: ASUSTeK Computer Inc.
  dmi.chassis.version: 1.0
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvrU36SD.205:bd07/12/2011:svnASUSTeKComputerInc.:pnU36SD:pvr1.0:rvnASUSTeKComputerInc.:rnU36SD:rvr1.0:cvnASUSTeKComputerInc.:ct10:cvr1.0:
  dmi.product.name: U36SD
  dmi.product.version: 1.0
  dmi.sys.vendor: ASUSTeK Computer Inc.

** Summary changed:

- Low speed when transferring files over USB drive (FAT)
+ Low speed when transferring files over USB drive

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Title:
  Low speed when transferring files over USB drive

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