So I'm not sure why people are still seeing a bug here.  The /usr/lib
/pm-utils/sleep.d/95hdparm-apm script does this:

        thaw|resume)
                resume_hdparm_apm
                # only set the -S option on resuming, not necessary for power.d
                resume_hdparm_spindown
                ;;

So it explicitly sets the -B and -S options on resume, which are the
exact options that users are reporting problems with.  I think someone
who's seeing this problem needs to diagnose what's going wrong with that
script.  Does it work if you run it by hand?

** Changed in: hdparm (Ubuntu)
       Status: Triaged => Incomplete

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https://bugs.launchpad.net/bugs/199094

Title:
  hdparm.conf settings (other than apm) are lost on suspend/resume?

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