I seem to have the same or a closely related problem, my mouse behaves
in exactly the same way as described above!

After a fresh install of 13.04, I installed gnome-shell, which is when
the problem started. However, It's still there after I have uninstalled
gnome-shell. It is always present after the first login after booting.

Logging out and back in removes the issue.

Any ideas what the issue might be?

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https://bugs.launchpad.net/bugs/1181666

Title:
  gnome-shell randomly blocks mouse from working

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