I had the exact same problem yesterday.  Ultimately, I found that the
following workaround got my system to reboot correctly:

1) load the eata module from the busybox shell and wait 10s
2) exit from the shell and log in once the system has loaded
3) echo eata >> /etc/initramfs-tools/modules
4) echo eata >> /etc/modules
5) update-initramfs -k all -u

My system:

Asus P2B (P II 450)
DPT PM3334UW RAID card
ATAPI CDROM

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EATA driver/module does not load
https://bugs.launchpad.net/bugs/120426
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