SimonP (peeters-simon) wrote:
> the problem is here that synaptic automatically installs
> ALL (also the dependencies of a selected package) packages
> as being "manually installed"

If that was ever true, it certainly is no longer the case.

BeowulfOF (beowulfof) wrote:
> But the whole system is not installed by synaptic, is it?

No, it is not.  The base packages are installed in two or more phases.  In 
Debian, this uses:
- debootstrap, which installs a very few packages;
- tasksel, which installs perhaps many packages.

All such packages are marked manually installed, at least in the past.

Recently both Debian and Ubuntu move to using task packages to handle
the default set of packages, and this should reduce the amount of noise
you see on a *freshly installed* desktop system.  This means that only
those packages installed in the first phase (debootstrap) will be marked
manual, plus a very few packages like ‘task-desktop’.

There have also been problems with e.g. upgrading packages marks them as
manually installed.  Most such issues have been resolved.

It is a kind of systemic problem that has been resolved quite a bit
recently, though perhaps not fully.  It is not a bug in synaptic per se,
so I am marking the task as invalid.  However, developers are quite
aware of the general issue and working to resolve the few remaining
pieces.

** Changed in: synaptic (Debian)
       Status: New => Invalid

** Changed in: synaptic (Ubuntu)
       Status: Confirmed => Invalid

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https://bugs.launchpad.net/bugs/512481

Title:
  Synaptic claims whole system als "manually installed"

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