Which version of gnome-system-monitor are you running? You can check it in the 
menu by clicking Help->About.
The 3.8 version has an option in Edit->Preferences->Resources tab to draw a 
stacked area chart. Toggling that option maybe shows what you would like to 
see, with a twist: all core usages are shown on one graph, but summed up as a 
stacked area chart, so that you can see how each core contributes to the total 
usage, but you can also see the total usage.
See the attached image from my System Monitor 3.8 (available in the stable 
13.04 and the development 13.10 version)
Would that help you, or you would like to see something else?

** Attachment added: "Stacked area chart in Gnome System Monitor 3.8"
   
https://bugs.launchpad.net/ubuntu/+source/gnome-system-monitor/+bug/1201229/+attachment/3737225/+files/stacked.png

** Changed in: gnome-system-monitor (Ubuntu)
     Assignee: (unassigned) => Robert Roth (evfool)

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https://bugs.launchpad.net/bugs/1201229

Title:
  Should be a choice for one graph on multicore CPUs

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