Resolution, change the last line of the following file:

:~$ cat /usr/share/applications/gtodo.desktop 
[Desktop Entry]
Name=Todo list
Comment=Todo list tool
Exec=gtodo
Terminal=false
Type=Application
Icon=gtodo.png
Categories=Application;Office;
StartupNotify=true
Encoding=UTF-8X-Ubuntu-Gettext-Domain=gtodo

to

Encoding=UTF-8
X-Ubuntu-Gettext-Domain=gtodo

Then logout, login, and it will correctly appear in the launcher.
Not sure where to send a patch.

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https://bugs.launchpad.net/bugs/986643

Title:
  gtodo does not show up on unity launcher. If laucnhed from terminal no
  icon is visible in alt-tab.

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