OK, hit this today. Never seen it before. I started to have weird problems with 
Google Hangout; the plugin failed to start on both 
firefox and chromium. Manually starting the plugin from command line I got:

$ /opt/google/talkplugin/GoogleTalkPlugin 
Failed to create secure directory (/run/user/1000/pulse): Permission denied

There I figured out there is something wrong with pulse:
$ pulseaudio --check
E: [pulseaudio] core-util.c: Failed to create secure directory 
(/run/user/1000/pulse): Permission denied

$ ls -lah /run/user/1000/
drwx------ 2 root  root  100 elo   13 11:31 pulse

Removing the directory fixed the problem with GoogleTalk. I guess all
the programs using pulse were affected.

Everything was working just fine yesterday. This morning I noticed my laptop 
had apparently run out of battery. Pluggin in the power chord and power up the 
machine it seemed that unity did not start straight away. I'm not sure what the 
failsafe error session looks like, but at least I first saw a bunch of 
undecorated problem report windows. So I would guess that the first session was 
run as root or something. Anyway after that the normal unity session started 
and I was greeted with this:
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1211674

So, could it be that at some error situation the X session is started as
root and pulse somehow creates it's /run/user/1000/pulse with root
permissions at situation like this?

** Tags added: apport-collected saucy

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https://bugs.launchpad.net/bugs/1197395

Title:
  /run/user/$ID/pulse owned by root and not by the user

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