> I mean protocol level timeing, response time, missing packets,...

AICCU can do little about high latency or missing packets.
As for 'timing' except for the requirement that hosts are NTP synced, there is 
no timing, AYIYA/proto-41 are lossless protocols, the tunneled protocols (eg 
TCP) will take care of retransmission.

> Basically aiccu should not change iptables

AICCU does not change iptables, why do you think it does that? Please
provide details.

> and shorewall dose it only ones when it have started,...,... there is
no ufw,..

Even if these components do not change, if connection tracking is
involved, then that might cause problems when the connection tracking is
not properly tracking the connections.

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https://bugs.launchpad.net/bugs/1261653

Title:
  aiccu can not route, looses route

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