Note that you can find the GL setup code here:

https://github.com/LWJGL/lwjgl/blob/master/src/native/linux/opengl/org_lwjgl_opengl_Display.c

somewhere around Java_org_lwjgl_opengl_LinuxDisplay_nCreateWindow

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https://bugs.launchpad.net/bugs/1277905

Title:
  Game windows (minecraft, titan attacks, maybe others) on Intel are
  transparent and no longer playable

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