Seems to be corrected in prelude-manager 1.0.1-4. 
Debian bugreport : https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=702703

Changes : Replace TYPE=InnoDB with ENGINE=InnoDB in SQL script (Closes:
#702703)

Any chance to see this version packaged for ubuntu 12.04 ?

** Bug watch added: Debian Bug tracker #702703
   http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=702703

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https://bugs.launchpad.net/bugs/1087994

Title:
  package prelude-manager 1.0.1-3 failed to install/upgrade: le sous-
  processus script post-installation installé a retourné une erreur de
  sortie d'état 1

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