Hi,
I a custom Ubuntu 12.04.4 I don't have it hanging but it is terribly slow to go 
to the next step. I also have 

APT::Periodic::Update-Package-Lists "1";
APT::Periodic::Download-Upgradeable-Packages "0";
APT::Periodic::AutocleanInterval "0";

in the 10periodic file.

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https://bugs.launchpad.net/bugs/803709

Title:
  last message on the screen at shutdown is "Checking for running
  unattended-upgrades:"

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