I was still get 'malformed file' on each cold boot.
And i got the idea to check, with gparted, how was set the boot flag as the 
system boot on sda:

- boot flag was set on sdb : with the latest grub2 i am getting the
error 'malformed file'. This was not an issue with the previous grub
2.02~beta2-8

- changing the boot flag to the sda hdd which is the bios booting on:
and now the error is gone.

On that system cgroup-lite cant be blamed as it has never been
installed. So its a grub2 regression as that error, with the same boot
flag on sdb, was not seen before the latest grub2 revision.

** Tags added: regression

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https://bugs.launchpad.net/bugs/1311247

Title:
  [Grubenv] error: malformed file, press any key to continue

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