> Are you saying you want the strace output now that I've got it to
work? Or to remove policykit-1 and try to reproduce in the original
state?

In the original broken state, please. If everything works, there's
nothing to debug :-) However..

>   Loaded: loaded (/etc/init.d/mysql)

This *is* unexpected. mysql-5.6 does have a native service file
/lib/systemd/system/mysql.service. So it seems you are not actually
running -5.6 here, but an older version, perhaps -5.5? So in that case
this actually is a duplicate of bug 1447807. Can you please install
updates and verify?

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https://bugs.launchpad.net/bugs/1450053

Title:
  upgrade 14.04 to 15.04, mysql no longer starts on boot due to missing
  policykit-1

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