Public bug reported:

Description:    Ubuntu 14.04.3 LTS
Release:        14.04

Running software updater I get the message waiting for configuration file 
prompt. The prompt is:
Replace your changes in 'etc/ati/atiapfxx' with a later version of the 
configuration file?
The list of changes is empty. Selecting either command button (Keep or Replace) 
does nothing and the system is hung.
I closed both the prompt and SoftwareUpdater dialogs and rebooted. I then 
removed the AMD proprietary driver. While it was being applied I got this???

ProblemType: Package
DistroRelease: Ubuntu 14.04
Package: dkms 2.2.0.3-1.1ubuntu5.14.04.2
ProcVersionSignature: Ubuntu 3.13.0-63.103-generic 3.13.11-ckt25
Uname: Linux 3.13.0-63-generic x86_64
NonfreeKernelModules: fglrx
ApportVersion: 2.14.1-0ubuntu3.13
AptdaemonVersion: 1.1.1-1ubuntu5.2
Architecture: amd64
Date: Tue Sep 15 23:40:36 2015
DpkgHistoryLog:
 Start-Date: 2015-09-15  23:40:31
 Commandline: aptdaemon role='role-commit-packages' sender=':1.62'
 Remove: fglrx-amdcccle:amd64 (15.200-0ubuntu0.5), fglrx:amd64 
(15.200-0ubuntu0.5)
DuplicateSignature: package:dkms:2.2.0.3-1.1ubuntu5.14.04.2:package dkms is 
already installed and configured
ErrorMessage: package dkms is already installed and configured
InstallationDate: Installed on 2015-02-07 (220 days ago)
InstallationMedia: Xubuntu 14.04.1 LTS "Trusty Tahr" - Release amd64 (20140723)
PackageArchitecture: all
RelatedPackageVersions:
 dpkg 1.17.5ubuntu5.4
 apt  1.0.1ubuntu2.10
SourcePackage: dpkg
Title: package dkms 2.2.0.3-1.1ubuntu5.14.04.2 failed to install/upgrade: 
package dkms is already installed and configured
UpgradeStatus: No upgrade log present (probably fresh install)

** Affects: dpkg (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: already-installed amd64 apport-package trusty

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https://bugs.launchpad.net/bugs/1496236

Title:
  package dkms 2.2.0.3-1.1ubuntu5.14.04.2 failed to install/upgrade:
  package dkms is already installed and configured

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