This bug was fixed in the package jayatana - 2.7-0ubuntu3.1
---------------
jayatana (2.7-0ubuntu3.1) vivid; urgency=medium
* Do not export JAVA_TOOL_OPTION session file for now. It seems jayatana
breaks some tools which are running java -version to grep for the runtime
version. Openjdk hardcode though some outputs "Picked up <variable name>"
that can't be suppress and isn't willing to remove it as they see it as
a security vulnerability. Remove session variable export until java
upstream get a proper upstream solution for Gnome Shell and Unity global
menu. (LP: #1441487)
Meanwhile, people who wants to keep this functionality enabled (or
programs which knows are working well with it) can reexport
JAVA_TOOL_OPTIONS="-javaagent:/usr/share/java/jayatanaag.jar
$JAVA_TOOL_OPTIONS" in their session environment on a per program by
program bases.
-- Didier Roche <didro...@ubuntu.com> Tue, 29 Sep 2015 17:40:39 +0200
** Changed in: jayatana (Ubuntu Vivid)
Status: Fix Committed => Fix Released
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https://bugs.launchpad.net/bugs/1441487
Title:
Running any Java program produces messages in the terminal, while
rendering many Java applications broken
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