There's more... After another very long delay to install packages, it
asks you for "PAM profiles to enable".

Q: Why would this ever need to change on an upgrade?
If it really is absolutely necessary to ask the user about this, then factor 
out the data-collection part so it can be run before starting the upgrade 
(perhaps passing the resulting data as options to the relevant program).

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https://bugs.launchpad.net/bugs/1007543

Title:
  Release upgrading requiring user input baffles inexperienced users

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