Not sure how to answer this.

The system worked before mis-fortunately pressing upgrade to 16.04
what happened next was done by the installer and packages so as a user there is 
very little to do about this.

Anyway here is how my "du /boot" looks like:

4       /boot/efi/EFI/ubuntu/fw
72      /boot/efi/EFI/ubuntu
76      /boot/efi/EFI
80      /boot/efi
3284    /boot/grub/x86_64-efi
2352    /boot/grub/fonts
20      /boot/grub/locale
8080    /boot/grub
166988  /boot

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https://bugs.launchpad.net/bugs/1574104

Title:
  grub-install: error: cannot find EFI directory. package shim-signed
  1.12+0.8-0ubuntu2 failed to install/upgrade: subprocess installed
  post-installation script returned error exit status 1

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