Public bug reported:

I'm in China.
setting manual proxy socks5 at network-manager, but the proxy not work for apt, 
for example: `apt update` and `select best server` for software mirror etc.

ProblemType: Bug
DistroRelease: Ubuntu 16.04
Package: network-manager 1.1.93-0ubuntu4
ProcVersionSignature: Ubuntu 4.4.0-22.39-generic 4.4.8
Uname: Linux 4.4.0-22-generic x86_64
ApportVersion: 2.20.1-0ubuntu2
Architecture: amd64
Date: Sat May  7 11:43:05 2016
IfupdownConfig:
 # interfaces(5) file used by ifup(8) and ifdown(8)
 auto lo
 iface lo inet loopback
InstallationDate: Installed on 2016-04-30 (6 days ago)
InstallationMedia: Ubuntu 16.04 LTS "Xenial Xerus" - Release amd64 (20160420.1)
IpRoute:
 default via 192.168.1.10 dev enp3s0  proto static  metric 100 
 169.254.0.0/16 dev enp3s0  scope link  metric 1000 
 192.168.1.0/24 dev enp3s0  proto kernel  scope link  src 192.168.1.1  metric 
100
IwConfig:
 enp3s0    no wireless extensions.
 
 lo        no wireless extensions.
NetworkManager.state:
 [main]
 NetworkingEnabled=true
 WirelessEnabled=true
 WWANEnabled=true
RfKill:
 
SourcePackage: network-manager
UpgradeStatus: No upgrade log present (probably fresh install)
nmcli-con:
 NAME                UUID                                  TYPE            
TIMESTAMP   TIMESTAMP-REAL                      AUTOCONNECT  
AUTOCONNECT-PRIORITY  READONLY  DBUS-PATH                                   
ACTIVE  DEVICE  STATE      ACTIVE-PATH                                        
 Wired connection 1  08e80fd3-0779-4bef-86d9-6501e4023370  802-3-ethernet  
1462592381  2016年05月07日 星期六 11时39分41秒  yes          4294966297            no    
    /org/freedesktop/NetworkManager/Settings/0  yes     enp3s0  activated  
/org/freedesktop/NetworkManager/ActiveConnection/0
nmcli-dev:
 DEVICE  TYPE      STATE      DBUS-PATH                                  
CONNECTION          CON-UUID                              CON-PATH              
                             
 enp3s0  ethernet  connected  /org/freedesktop/NetworkManager/Devices/0  Wired 
connection 1  08e80fd3-0779-4bef-86d9-6501e4023370  
/org/freedesktop/NetworkManager/ActiveConnection/0 
 lo      loopback  unmanaged  /org/freedesktop/NetworkManager/Devices/1  --     
             --                                    --
nmcli-nm: Error: command ['nmcli', '-f', 'all', 'nm'] failed with exit code 2: 
Error: Object 'nm' is unknown, try 'nmcli help'.

** Affects: network-manager (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-bug xenial

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https://bugs.launchpad.net/bugs/1579298

Title:
  network-manager manual proxy not work for apt

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