root@checkinstall-bug-trusty:~# apt-get install checkinstall
root@checkinstall-bug-trusty:~# apt-get source haproxy
root@checkinstall-bug-trusty:~# cd haproxy*
root@checkinstall-bug-trusty:~/haproxy-1.5.14# mkdir -p etc/haproxy
root@checkinstall-bug-trusty:~/haproxy-1.5.14# touch etc/haproxy/haproxy.cfg
root@checkinstall-bug-trusty:~/haproxy-1.5.14# echo 'etc/haproxy/haproxy.cfg' 
>> includes
root@checkinstall-bug-trusty:~/haproxy-1.5.14# checkinstall -y 
--include=includes
root@checkinstall-bug-trusty:~/haproxy-1.5.14# dpkg -e haproxy*.deb
root@checkinstall-bug-trusty:~/haproxy-1.5.14# cat DEBIAN/conffiles | wc -l
0

after applying patched package of checkinstall, repeat the above steps

root@checkinstall-bug-trusty:~/haproxy-1.5.14# cat DEBIAN/conffiles | wc -l
1

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https://bugs.launchpad.net/bugs/1304760

Title:
  checkinstall fails to add files to dpkg conffiles

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