initramfs-tools in xenial-proposed solves this issue.
ubuntu@test:~$ dpkg --list | grep initramfs-tools
ii initramfs-tools 0.122ubuntu8.8 all
generic modular initramfs generator (automation)
ii initramfs-tools-bin 0.122ubuntu8.8 amd64
binaries used by initramfs-tools
ii initramfs-tools-core 0.122ubuntu8.8 all
generic modular initramfs generator (core tools)
ubuntu@test:~$ zcat initrd.img-4.4.0-59-generic | cpio -idmv 2> /dev/null
ubuntu@test:~$ find . -name 'xhci-plat*'
./lib/modules/4.4.0-59-generic/kernel/drivers/usb/host/xhci-plat-hcd.ko
** Tags removed: verification-needed
** Tags added: verification-done
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https://bugs.launchpad.net/bugs/1649213
Title:
Support rootfs on xhci-plat-hcd attached storage
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