My simple workaround which forces discover to work as expected:

sudo apt-get install cron-apt
sudo rm /etc/cron-apt/action.d/3-download
sudo ln -s /usr/sbin/cron-apt /etc/cron.daily/cron-apt

It installs cron-apt package, removes default action: download of
packages for upgrade and starts "apt-get update" automaticaly daily,
more or less within one hour after session start. If there is something
to upgrade you can see immediately after cron-apt "apt-get update"
Software updates widget in the system bar.

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https://bugs.launchpad.net/bugs/1571417

Title:
  Kubuntu 16.04 update manager not working

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