@Kai Heng:

It should not be machine/chipset specific, but may have some BIOS
component to this due to BIOS sends the hotplug event.  If the hotplug
event comes too soon (before enumeration is done) you should see this
behavior.

It's specific to PCIe tunnels of TBT devices.  You won't for example see
it if you connect a non-TBT type-C device to the the type-C port of the
TB16 or a display to one of the display ports.

The USB hub and USB ports are however behind the PCIe tunnels though and
should hit this issue.

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https://bugs.launchpad.net/bugs/1697395

Title:
  Thunderbolt devices don't work if connected during boot

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