Please try latest mainline kernel (v4.13-rc3)
I think this commit solves the issue:
commit bd77a0f08ec57f7b805dfbaa64b36329dfa005d6
Author: Alex Henrie <alexhenri...@gmail.com>
Date: Fri Jun 2 09:28:39 2017 -0600
HID: apple: Use country code to detect ISO keyboards
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https://bugs.launchpad.net/bugs/1245081
Title:
macbook keyboard layout maps the tilde key to something else
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