Daniel, thank you so much for your time investigating this, I appreciate
it.

The /etc/modprobe.d definitely exists:

$  ls -la /etc/modprobe.d/
total 76
drwxr-xr-x   2 root root  4096 okt 23 11:51 .
drwxr-xr-x 153 root root 12288 okt 23 11:51 ..
-rw-r--r--   1 root root  2507 júl 31  2015 alsa-base.conf
-rw-r--r--   1 root root   325 mar 13  2016 blacklist-ath_pci.conf
-rw-r--r--   1 root root  1603 mar 13  2016 blacklist.conf
-rw-r--r--   1 root root   210 mar 13  2016 blacklist-firewire.conf
-rw-r--r--   1 root root   697 mar 13  2016 blacklist-framebuffer.conf
-rw-r--r--   1 root root   156 júl 31  2015 blacklist-modem.conf
lrwxrwxrwx   1 root root    41 sep  5  2016 blacklist-oss.conf -> 
/lib/linux-sound-base/noOSS.modprobe.conf
-rw-r--r--   1 root root   583 mar 13  2016 blacklist-rare-network.conf
-rw-r--r--   1 root root  1077 mar 13  2016 blacklist-watchdog.conf
-rw-r--r--   1 root root   127 feb  7  2017 dkms.conf
-rw-r--r--   1 root root   154 nov 10  2015 intel-microcode-blacklist.conf
-rw-r--r--   1 root root   347 mar 13  2016 iwlwifi.conf
-rw-r--r--   1 root root   379 júl 28  2016 mdadm.conf
-rw-r--r--   1 root root   104 mar 13  2016 mlx4.conf
-rw-r--r--   1 root root    68 dec 28  2015 osspd.conf
-rw-r--r--   1 root root    30 mar  3  2016 vmwgfx-fbdev.conf

I am typing this from my wayland-enabled session, and the journalctl
also contains those lines:

okt 23 08:41:32 mavi-vaadin gpu-manager[1074]: /etc/modprobe.d is not a file
okt 23 08:41:32 mavi-vaadin kernel: new mount options do not match the existing 
superblock, will be ignored
okt 23 08:41:32 mavi-vaadin anacron[1079]: Will run job `cron.daily' in 5 min.
okt 23 08:41:32 mavi-vaadin anacron[1079]: Jobs will be executed sequentially
okt 23 08:41:32 mavi-vaadin gpu-manager[1074]: /etc/modprobe.d is not a file
okt 23 08:41:32 mavi-vaadin gpu-manager[1074]: /etc/modprobe.d is not a file
okt 23 08:41:32 mavi-vaadin avahi-daemon[1078]: Found user 'avahi' (UID 113) 
and group 'avahi' (GID 122).
okt 23 08:41:32 mavi-vaadin avahi-daemon[1078]: Successfully dropped root 
privileges.
okt 23 08:41:32 mavi-vaadin gpu-manager[1074]: /etc/modprobe.d is not a file
okt 23 08:41:32 mavi-vaadin avahi-daemon[1078]: avahi-daemon 0.6.32 starting up.
okt 23 08:41:32 mavi-vaadin ModemManager[1080]: <info>  ModemManager (version 
1.6.8) starting in system bus...
okt 23 08:41:32 mavi-vaadin gpu-manager[1074]: /etc/modprobe.d is not a file
okt 23 08:41:32 mavi-vaadin gpu-manager[1074]: Error: can't open 
/lib/modules/4.13.0-16-generic/updates/dkms
okt 23 08:41:32 mavi-vaadin gpu-manager[1074]: update-alternatives: error: no 
alternatives for x86_64-linux-gnu_gfxcore_

I have the root FS encrypted by LLVM/dmcrypt, and it couldn't have been
mounted so soon, since it takes cca 2 seconds to enter my password.
Could that be the reason of seeing those error messages?

Anyways, since those messages are present and I'm able to run wayland,
this leads me to believe that those lines are unconnected to this issue.

Anyways, googling for the gnome-shell error message did in fact found
something very interesting:
https://bugzilla.redhat.com/show_bug.cgi?id=1402283

It seems that even on non-hybrid desktop systems with two completely
separate graphic cards gnome-shell seemingly can't find drm kms device
(even though there are two of those). So the error message may be
misleading, since disabling kms on second card in fact works around this
issue. I will try the same and disable KMS on nouveau and let you know.

Thanks again for looking into this issue!

** Bug watch added: Red Hat Bugzilla #1402283
   https://bugzilla.redhat.com/show_bug.cgi?id=1402283

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https://bugs.launchpad.net/bugs/1724583

Title:
  gdm3 in Ubuntu 17.10 doesn't list wayland sessions when using hybrid
  graphics

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