I am having the same issue with Ubuntu 17.10 running on XORG. This is a
VM inside vmware fusion pro 10. The mouse can move around but the clicks
dont work anywhere. I start a terminal session with ctrl + alt + t and
then alt + tab and then click on the terminal that i opened earlier for
the clicks to start working again.

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https://bugs.launchpad.net/bugs/1181666

Title:
  gnome-shell randomly blocks mouse clicks from working in app windows

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