I just tried to recreate this but they happily work together.
I realized that your apache is slightly outdated with 2.4.18-2ubuntu3.8 beign 
current now.
But none of the changes since then addressed this issue.

And I see in your logs that on 2018-04-13  13:34:27 you also installed
both just fine.

Is that reproducible, which means when you run "apt upgrade" it again
fails the same way?

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https://bugs.launchpad.net/bugs/1765598

Title:
  package apache2 2.4.18-2ubuntu3.5 failed to install/upgrade: trying to
  overwrite '/var/www/html', which is also in package nginx-common
  1.10.3-0ubuntu0.16.04.2

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