Now I am just reading the referred similar bug:
https://bugs.launchpad.net/ubuntu/+source/unity-settings-daemon/+bug/1435020
I have the very similar problems.

In addition to that, when I applied the suggested "unity-settings-daemon 
--replace" command, then not only my custon settings, but the usual 
Ctrl-Alt-T terminal short cut also went away.  But interestingly not 
everything went away, for example the Alt-` is still working (switch 
between the windows of the same binary), this is not in the custom 
section, and formerly it was a default setting.


prohlep@pc56:~$ ps ax | grep settings-daemon
  1934 ?        Sl     0:00 
/usr/lib/unity-settings-daemon/unity-fallback-mount-helper
  3287 pts/0    Sl+    0:00 unity-settings-daemon --replace
  3296 pts/0    Sl+    0:00 /usr/lib/unity-settings-daemon/usd-locate-pointer
  3340 pts/1    S+     0:00 grep settings-daemon
prohlep@pc56:~$ unity-settings-daemon --replace

** (unity-settings-daemon:3287): WARNING **: 09:12:51.381: Failed to load 
PNP ids: Failed to open file “/usr/share/hwdata/pnp.ids”: No such file or 
directory

(unity-settings-daemon:3287): Gtk-WARNING **: 09:12:51.462: Theme parsing 
error: gtk-main.css:73:38: Failed to import: Error opening file 
/usr/share/themes/Radiance/gtk-3.20/apps/gnome-builder.css: No such file 
or directory

** (unity-settings-daemon:3287): WARNING **: 09:12:51.539: Failed to load 
PNP ids: Failed to open file “/usr/share/hwdata/pnp.ids”: No such file or 
directory

** (unity-settings-daemon:3287): WARNING **: 09:12:51.539: Failed to load 
PNP ids: Failed to open file “/usr/share/hwdata/pnp.ids”: No such file or 
directory

(unity-settings-daemon:3287): media-keys-plugin-WARNING **: 09:12:51.552: 
Grab failed for some keys, another application may already have access the 
them.

(usd-locate-pointer:3296): Gtk-WARNING **: 09:12:51.559: Theme parsing 
error: gtk-main.css:73:38: Failed to import: Error opening file 
/usr/share/themes/Radiance/gtk-3.20/apps/gnome-builder.css: No such file 
or directory

(unity-settings-daemon:3287): Gtk-WARNING **: 09:12:51.566: Theme parsing 
error: gtk-main.css:73:38: Failed to import: Error opening file 
/usr/share/themes/Radiance/gtk-3.20/apps/gnome-builder.css: No such file 
or directory

** (unity-settings-daemon:3287): WARNING **: 09:12:51.582: Failed to load 
PNP ids: Failed to open file “/usr/share/hwdata/pnp.ids”: No such file or 
directory


(unity-settings-daemon:3287): GLib-GIO-CRITICAL **: 09:13:15.145: 
g_dbus_proxy_call_internal: assertion 'G_IS_DBUS_PROXY (proxy)' failed

^^^^^^^^ here the last log item shows what happens, when I wist to refresh 
the key binding in the custom section.  Everytime I try to set a 
keybinding this gets printed.


Also the line "(unity-settings-daemon:3287): media-keys-plugin-WARNING **: 
09:12:51.552: Grab failed for some keys, another application may already 
have access the them." is interesting, ... is this because I started 
"unity-settings-daemon --replace" manually, and therfore now the original 
is running and my new command is also running?

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https://bugs.launchpad.net/bugs/1755106

Title:
  /org/gnome/settings-daemon/plugins/media-keys/custom-keybindings/
  fails to load

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