I can say with reasonable confidence that this bug is introduced by
gnome-shell-extension-ubuntu-dock_64ubuntu7_all.deb. I downgraded by
downloading gnome-shell-extension-ubuntu-dock_64ubuntu6_all.deb from
https://launchpad.net/~ci-train-ppa-
service/+archive/ubuntu/3701.1-deletedppa/+build/16616785 and installing
with dpkg. No dependency issues or conflicts were identified and the
package installed without issue. I restarted my test system and the
problem appears fixed.

I'll report back if this is a red herring, but I thought I should report
as soon as possible so that other's might benefit.

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https://bugs.launchpad.net/bugs/1181666

Title:
  gnome-shell randomly blocks mouse clicks from working in app windows

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