Good to know, thanks. Maybe something in the reboot process is exporting
these extra pools, causing them to be removed from the cache.

Have you guys also tried editing /etc/default/zfs and listing your extra
pool(s) there? Specifically:

# List of pools that SHOULD be imported at boot by the initramfs
# instead of trying to import all available pools.  If this is set
# then ZFS_POOL_EXCEPTIONS is ignored.
# Only applicable for Debian GNU/Linux {dkms,initramfs}.
# This is a semi-colon separated list.
#ZFS_POOL_IMPORT="pool1;pool2"

There is also ZPOOL_IMPORT_ALL_VISIBLE='no' with a big disclaimer on top
of it.

Not saying that the current behaviour isn't a bug: just investigating
options.

Might need an initramfs update after changing anything in that file,
tough.

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https://bugs.launchpad.net/bugs/1850130

Title:
  zpools fail to import after reboot on fresh install of eoan

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