Here is my journal -f output when the bug happens.

The moment it freezes:
JS ERROR: Error: incorrect grab helper pop

Every (no longer working) click after the freeze will result in this message:
JS ERROR: TypeError: this._grabStack[i] is undefined

** Attachment added: "journal -f"
   
https://bugs.launchpad.net/ubuntu/+source/gnome-shell/+bug/1181666/+attachment/5368203/+files/journal.txt

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https://bugs.launchpad.net/bugs/1181666

Title:
  gnome-shell randomly blocks mouse clicks from working in app windows

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