So you have one machine with a 2.6.16 based kernel where it works and
one with a 2.6.20 based kernel where it is unstable.

What does "cat /sys/module/sbp2/parameters/serialize_io" say?  If it is
1, then it's OK.

Do you use a long cable or a front panel connector or something like
that on the unstable PC?

Do live CDs of Ubuntu Feisty and Dapper exist to easily try them out
without installing them?  Then you could try Feisty on the so far
working machine and/or Dapper on the unstable machine.

-- 
Flaky firewire disks Fail Feisty but Do Dapper
https://bugs.launchpad.net/bugs/134396
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