Thanks for the comments.
I was able to confirm this bug by doing:
# cat >> /etc/profile <<EOF
alias mytest="echo hello"
EOF
# byobu-shell
# mytest
bash: mytest: command not found
This is also present in Groovy and Hirsute, and upstream hasn't replied
yet.
** Changed in: byobu (Ubuntu)
Status: New => Triaged
** Changed in: byobu (Ubuntu)
Importance: Undecided => Low
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https://bugs.launchpad.net/bugs/1618516
Title:
Byobu does not read aliases defined in /etc/profile.d or in .profile
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