$ dpkg -S /etc/apt/apt.conf.d/01autoremove /etc/apt/apt.conf.d/01ubuntu
apt: /etc/apt/apt.conf.d/01autoremove
apt: /etc/apt/apt.conf.d/01ubuntu

This is a bug in the apt package, not aptitude.

-- 
[gutsy] Aptitude doesn't handle recommends properly & doesn't remove unneeded 
dependencies automatically
https://bugs.launchpad.net/bugs/128681
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Bugs, which is the bug contact for Ubuntu.

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