i did the xprop | grep WM_CLASS and it identifed the run dialog as
gnome-panel if it is NOT the cause please put it into the right category
wills ya :)

** Changed in: gnome-panel (Ubuntu)
Sourcepackagename: None => gnome-panel

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(GUTSY) Typing sudo in run applications dialog box freezes system
https://bugs.launchpad.net/bugs/174599
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