Yes the security team favors both consistency and the principle of least
surprise for users here - ie. flatpak should follow the same model as
apt/snaps on Ubuntu so that no matter what mechanism is used to install
a particular application, the user gets the same consistent experience
in terms of being prompted for authorisation etc around updates and the
like.

As such, installation of new apps via flatpak should use polkit to
authorise the transaction - whilst upgrades should not.

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https://bugs.launchpad.net/bugs/1943480

Title:
  flatpak installation permission requirements different from ubuntu
  software

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