Is your touchpad a synaptic one? If it's the case there is a wrong
configuration in your xorg.conf file. Try replacing that with this:

Section "InputDevice"
    Identifier     "Synaptics Touchpad"
    Driver         "synaptics"
    Option         "SendCoreEvents" "true"
    Option         "Device" "/dev/psaux"
    Option         "Protocol" "auto-dev"
    Option         "HorizEdgeScroll" "0"
    Option         "Emulate3Buttons" "true"
    Option         "SHMConfig"  "on"
EndSection

-- 
touchpad scrolling gone in hardy
https://bugs.launchpad.net/bugs/180755
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