Public bug reported:
The autopkgtest fails with the following error:
32s ======================== 7 passed, 12 skipped in 1.07s
=========================
132s cram3 --verbose --xunit-file=cramtests.xml `ls test/cram/*.t | grep -v
detection_bam`
134s test/cram/version.t: failed
134s --- test/cram/version.t
134s +++ test/cram/version.t.err
134s @@ -5,8 +5,8 @@
134s
134s $ ipdSummary
134s usage: ipdSummary [-h] [--version] [--log-file LOG_FILE]
134s - [--log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL} |
--debug | --quiet | -v]
134s - --reference REFERENCE [--gff GFF] [--csv CSV]
134s + [--log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL} |
--debug |
134s + --quiet | -v] --reference REFERENCE [--gff GFF]
[--csv CSV]
134s [--bigwig BIGWIG] [--numWorkers NUMWORKERS]
134s [--pvalue PVALUE] [--maxLength MAXLENGTH]
134s [--identify IDENTIFY] [--methylFraction] [--outfile
OUTFILE]
134s # Ran 1 tests, 0 skipped, 1 failed.
134s make: *** [Makefile:32: cram-tests] Error 1
134s autopkgtest [11:37:13]: test command1: -----------------------]
134s autopkgtest [11:37:13]: test command1: - - - - - - - - - - results - - -
- - - - - - -
134s command1 FAIL non-zero exit status 2
135s autopkgtest [11:37:14]: @@@@@@@@@@@@@@@@@@@@ summary
135s command1 FAIL non-zero exit status 2
140s nova [W] Skipping flock for amd64
[1] https://autopkgtest.ubuntu.com/results/autopkgtest-
plucky/plucky/amd64/k/kineticstools/20250105_113719_ea200@/log.gz
** Affects: kineticstools (Ubuntu)
Importance: Undecided
Status: New
** Affects: python3.13 (Ubuntu)
Importance: Undecided
Status: New
** Also affects: python3.13 (Ubuntu)
Importance: Undecided
Status: New
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https://bugs.launchpad.net/bugs/2093383
Title:
kineticstools fails autopkgtest due to argparse changes in python 3.13
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