Public bug reported:
Imported from Debian bug http://bugs.debian.org/1128281:
Source: python-skbio
Version: 0.6.3-1
Severity: normal
python-skbio is failing tests with scipy 1.17, currently
available in experimental.
794s =========================== short test summary info
============================
794s FAILED
diversity/tests/test_driver.py::BetaDiversityTests::test_available_metrics
794s FAILED
diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549
794s FAILED
stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null
794s FAILED stats/tests/test_composition.py::AncomTests::test_ancom_no_signal -
As...
794s ===== 4 failed, 3056 passed, 30 skipped, 76 warnings in 664.43s (0:11:04)
======
The error appears to be use of a deprecated API:
794s E ValueError: Unknown Distance Metric: sokalmichener
python-skbio 0.7 has been released, does it fix the problem?
** Affects: python-skbio (Ubuntu)
Importance: Undecided
Status: New
** Affects: scipy (Ubuntu)
Importance: Undecided
Status: New
** Affects: python-skbio (Debian)
Importance: Undecided
Status: New
** Tags: update-excuse
** Bug watch added: Debian Bug tracker #1128281
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1128281
** Changed in: python-skbio (Debian)
Remote watch: None => Debian Bug tracker #1128281
** Also affects: scipy (Ubuntu)
Importance: Undecided
Status: New
** Tags added: update-excuse
--
You received this bug notification because you are a member of Ubuntu
Bugs, which is subscribed to Ubuntu.
https://bugs.launchpad.net/bugs/2163628
Title:
python-skbio: tests fail with scipy 1.17
To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/python-skbio/+bug/2163628/+subscriptions
--
ubuntu-bugs mailing list
[email protected]
https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
