I have the same problem here.  Sometimes seahorse crashes, and then ssh
seems not to work.  My workaround is to blank out the ssh-agent
variables on the command line:

$ SSH_AGENT_PID= SSH_AUTH_SOCK= ssh wherever

It's a really frustrating bug, because ssh doesn't work and gives no
indication why unless you do ssh -v.  Otherwise it just waits forever.
I wish there was a way to tell GNOME that seahorse has crashed, and to
restart it and update the environment variables for new shells.

-- 
can't ssh out; seahorse-agent seems dead
https://bugs.launchpad.net/bugs/111771
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