Public bug reported: Binary package hint: gromacs
Please sync gromacs 3.3.3-2 from Debian unstable. This is a part of the gfortran, bug #201962, (blanket FFe) and mpich (Bug #202817) transitions. I have verified that the package builds/installs/works in Hardy. It has no reverse dependencies other than metapackages. Relevant changelong entries: gromacs (3.3.3-2) unstable; urgency=low * debian/control: Eliminate unneeded Build-Depends on libxml-dev. Spotted by Pierre Habouzit. (Closes: #470000) * debian/rules: Force --with-gsl in configuration. -- Nicholas Breen <[EMAIL PROTECTED]> Sat, 08 Mar 2008 12:34:36 -0800 gromacs (3.3.3-1) unstable; urgency=low [ Nicholas Breen ] * New upstream release. * debian/rules, debian/control: Reconfigure gromacs-doc as gromacs-data. This moves all architecture independent files into a single package, including many topology files formerly shipped in gromacs instead. - Rename debian/*gromacs-doc* to debian/*gromacs-data* . - debian/gromacs-doc.preinst: no longer necessary, removed. * Remove PDF manual for the time being, as modifiable sources are not currently available. - debian/gromacs.README.Debian, debian/man/gromacs.7: Provide pointers to its location online instead. - debian/control: Drop build dependency on sharutils, which was used only to provide the manual. - debian/gromacs-data.doc-base: Remove reference to PDF. * debian/control: Add Build-Depends on libgsl0-dev to support addition of /usr/bin/g_kinetics. * debian/gromacs.README.Debian: Update suggested MPI implementations. * debian/man: write preliminary man pages for undocumented new commands, g_kinetics.1 g_spatial.1 g_sdf.1 * debian/patches/10_manpages: Update with ROFF fixes to 18 files; fix a few minor typos; resync patch against upstream CVS. * debian/man/mdrun_mpi.{mpich,lam,openmpi}.1: Propagate those fixes. * debian/lintian-overrides.gromacs: Drop binary-without-manpage override. * debian/linda-overrides.gromacs, debian/rules: Remove linda override. [ Daniel Leidert ] * debian/man/average.1: Minor ROFF improvements, hyphen/minus and typo fixes. * debian/man/g_nmtraj.1: Ditto. * debian/man/luck.1: Ditto. -- Nicholas Breen <[EMAIL PROTECTED]> Mon, 03 Mar 2008 21:23:01 -0800 gromacs (3.3.3~pre1-1) unstable; urgency=low [ Nicholas Breen ] * New upstream release. - Remove obsolete patches now incorporated upstream: 50_xtcio_double_range_checking, 51_180_degree_angle, 52_pme_spline, 53_pbc_compiler. * debian/rules: - Clean up patch syntax to prevent double compilations. - Add .NOTPARALLEL target to prevent the various MPI builds from compiling on the same source tree simultaneously, while still allowing -j options to be passed to sublevel targets. - Improve DEB_BUILD_OPTIONS=parallel=X handling, now in line with the example proposed for policy. - Disable FORTRAN inner loops for gromacs-openmpi on alpha. This is a temporary workaround to avoid lingering linking problems regarding libmpi.so and the update-alternatives system. - Add support for DEB_BUILD_OPTIONS=noopt. - Additional rewrite work (see below): use new format for build commands, but split for individual MPI implementations. - Run autotools between patch and configuration steps. - New format for MPI library suffix configuration. * debian/control: - Add versioned Build-Depends on libmpich1.0-dev for its g77 -> gfortran transition. - Add Build-Depends on autoconf and automake, and Build-Conflicts on autoconf2.13, to support updated mpisuffix patch. - Downgrade gromacs-doc Depends: on gromacs to a Recommends:, as -doc now ships its own copyright file. * debian/patches/04_autoconf_mpisuffix.dpatch: Apply dleidert's improved patch to allow arbitrary overrides of LIBSUFFIX; reduce patch to only the directly changed code in configure.ac, and add an invocation of autotools during the build process rather than patching configure itself directly. * debian/gromacs-{doc,dev}.preinst: Remove symlinks for package doc directories on upgrade, in order to replace them with actual directories. [ Daniel Leidert ] * debian/control (Suggests): Fixed a debcheck issue - gromacs-openmpi should only be suggested on supported architectures. * debian/copyright: Added copyright information to satisfy lintian. * debian/gromacs-doc.doc-base (Section): Fixed accordingly to menu policy. (Format): Fixed path to HTML files. * debian/rules: Major rewrite. Changes/improvements include: - drop dpatch target definitions in favour of dpatch.make - put all configure flags to the top of the file - moved all configure related commands into configure-stamp - moved all build related commands into build-stamp - moved all install related commands into separate install targets - configure and build in sub-directories to avoid $(MAKE) clean calls - clean target removes build/ instead to run clean/distclean - replaced ln with dh_link and gzip with dh_installman - adjusted target requirements for binary* and install* - install a /usr/share/doc/$package directory for gromacs-doc and -dev too; put the HTML into the -doc documentation directory; add links to the HTML directory for the gromacs and the -dev package pointing to the -doc directory - fixed .PHONY target for above * debian/watch: Added pre-release version handling. -- Nicholas Breen <[EMAIL PROTECTED]> Wed, 13 Feb 2008 15:01:50 -0800 gromacs (3.3.2-3) unstable; urgency=low * Package transferred to Debichem team maintenance. * debian/control: - Switched Maintainer to Debichem Team, moved myself to Uploaders. Added Vcs-Browser, Vcs-Svn fields. - Increase Standards-Version to 3.7.3. No changes required. - Build-Depend on libopenmpi-dev >= 1.2.4-5 (Closes: #456860). * debian/rules: include kfreebsd-* variants explicitly in OPENMPI_ARCH. * debian/patches/11_readme.dpatch: change edited README to an explicit patch, rather than modifying it directly in the .diff.gz. * Multiple bugfixes from upstream CVS: - 51_180_degree_angle.dpatch: apply upstream patches to avoid crashes crashes when operating on precisely linear 2-bond pairs. (cf. http://bugzilla.gromacs.org/show_bug.cgi?id=172, http://bugzilla.gromacs.org/show_bug.cgi?id=177) - 52_pme_spline.dpatch: calculate mesh contribution when charges are 0 in A state, but non-zero in B state. (cf. http://bugzilla.gromacs.org/show_bug.cgi?id=175) - 53_pbc_compiler: Solve regression in gmxlib/pbc.c introduced by a previous compiler workaround. (cf. http://bugzilla.gromacs.org/show_bug.cgi?id=179) * debian/gromacs-doc.doc-base: remove extraneous spaces. -- Nicholas Breen <[EMAIL PROTECTED]> Wed, 26 Dec 2007 12:26:09 -0800 ** Affects: gromacs (Ubuntu) Importance: Wishlist Status: Confirmed -- Please sync gromacs 3.3.3-2 (universe) from Debian unstable (main) https://bugs.launchpad.net/bugs/207567 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs