Ok, I got it working. It is though not because of Fuse which I updated from 
version 2.7.2 to 2.7.3 but because I created the encfs folder with cryptkeeper 
before which might have used the paranoia option by default, I'm not sure.
Creating with "encfs <folder> <folder>" and then selecting standard mode works 
fine. Are there combinations of settings which can give this result or is this 
still a bug which then probably occurs under certain conditions?

Below are the outputs of encfsctl info for a folder created with
cryptkeeper and the one that works that is created using standard mode

cryptkeeper:

Version 6 configuration; created by EncFS 1.4.2 (revision 20080813)
Dateisystem-Verschlüsselung: "ssl/aes", Version 2:1:0 (verwende 2:1:1)
Dateinamenkodierung: "nameio/block", Version 3:0:0 (verwende 3:0:1)
Schlüssellänge: 256 Bits
Blockgröße: 512 Bytes, enthält 8 Bytes MAC-Kopf
Jede Datei enthält 8 Bytes Vorspann mit einmaligen IV-Daten.
Dateinamenkodierung benutzt IV-Verkettungsmodus.
Dateidaten-IV ist mit Dateinamen-IV verkettet.

standard mode:

Version 6 configuration; created by EncFS 1.4.2 (revision 20080813)
Dateisystem-Verschlüsselung: "ssl/aes", Version 2:1:0 (verwende 2:1:1)
Dateinamenkodierung: "nameio/block", Version 3:0:0 (verwende 3:0:1)
Schlüssellänge: 192 Bits
Blockgröße: 1024 Bytes
Jede Datei enthält 8 Bytes Vorspann mit einmaligen IV-Daten.
Dateinamenkodierung benutzt IV-Verkettungsmodus.

-- 
rsync timestamp bug on encfs/fuse
https://bugs.launchpad.net/bugs/81080
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