More info:
I deleted /usr/bin/myapp and ran myapp_entry using ALT+F2. It executes 
/opt/bin/myapp as it should. My guess is that the .desktop file launcher 
(klauncher?) is prepending /usr/bin to the PATH variable.
Any comments?

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.desktop file not honoring PATH environment variable
https://bugs.launchpad.net/bugs/252571
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