I found out that this is a known bug, which can be worked around by an
addon for Thunderbird 2.0 <https://addons.mozilla.org/en-
US/thunderbird/addon/2131>.  Its message led me to believe that it still
had the vulnerability, just removing the annoyance.  But looking in its
preferences, it looks like it actually does store the entire domain-
domain pairs.  Allegedly Thunderbird 3 (alpha) has native support that
fixes the problem, due to using Gecko 1.9 (Firefox 3's engine).

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IMAP/certificate/security weakness/needing to restart Thunderbird
https://bugs.launchpad.net/bugs/239360
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