Where does this bug with fsck come from? Maybe the file the password is read 
from (/dev/.initramfs/usplash_outfifo) isn't empty but filled with the output 
of fsck? If so, why can't you just empty it before prompting for the password 
and then reading it?
"cat" will block if (as it should be) there's no line or byte to read from the 
file. I don't know, if there's any commandline tool to do this properly, but 
something like this works:

sudo -s
echo -e "some stupid input just to have something within the file" > 
/dev/.initramfs/usplash_outfifo
cat -u /dev/.initramfs/usplash_outfifo

So maybe we can put something like this right before prompting for the
password in order to empty the file the password is read from.

-- 
"Enter passphrase" for LUKS/cryptsetup breaks usplash
https://bugs.launchpad.net/bugs/139363
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