this happens to me as well but the application that I open doesn't
matter... happens on all of them.
Here is my xorg.conf
Section "InputDevice"
Identifier "Generic Keyboard"
Driver "kbd"
Option "XkbRules" "xorg"
Option "XkbModel" "pc104"
Option "XkbLayout" "us"
EndSection
Section "InputDevice"
Identifier "Configured Mouse"
Driver "mouse"
Option "CorePointer"
EndSection
Section "InputDevice"
Identifier "Synaptics Touchpad"
Driver "synaptics"
Option "SendCoreEvents" "true"
Option "Device" "/dev/psaux"
Option "Protocol" "auto-dev"
Option "HorizEdgeScroll" "0"
EndSection
Section "Device"
Identifier "Intel 945G "
Driver "intel"
Option "monitor-LVDS" "monLVDS"
Option "monitor-VGA" "monVGA"
EndSection
Section "Monitor"
Identifier "monLVDS"
Option "PreferredMode" "1400x1050"
# Option "Position" "0 0"
EndSection
Section "Monitor"
Identifier "monVGA"
Option "PreferredMode" "1024x768"
Option "LeftOf" "monLVDS"
# Option "Position" "-1600 -300"
EndSection
Section "Screen"
Identifier "Default Screen"
Device "Intel Corporation 945G Integrated Graphics Controller"
Monitor "monLVDS"
DefaultDepth 24
SubSection "Display"
Depth 24
Modes "1400x1050"
Virtual 2680 1050
EndSubSection
EndSection
--
starting powertop on a system with dual-head makes secondary monitor flicker
https://bugs.launchpad.net/bugs/228804
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